Chocolate Thumbprint Cookies with Rich Chocolate Ganache Recipe
Introduction
These Chocolate Thumbprint Cookies are rich, fudgy, and filled with a luscious chocolate ganache. Perfect for chocolate lovers, they make a delightful treat for any occasion, combining a tender cookie with a creamy center.

Ingredients
- 1 1/2 cups (188 g) all-purpose flour, spooned and leveled
- 1/2 cup (40 g) cocoa powder (Dutch process)
- 1/2 tsp salt
- 1/2 tsp baking powder
- 3/4 cup (168 g) unsalted butter, softened
- 3/4 cup (165 g) light brown sugar, packed
- 1/4 cup (50 g) granulated white sugar
- 2 egg yolks, at room temperature
- 1 1/2 tsp vanilla bean paste or extract
- 1 cup (200 g) semi-sweet chocolate chips
- 1/2 cup (120 ml) heavy whipping cream
- Nonpareils for sprinkling on top (optional)
Instructions
- Step 1: Line two baking sheets with parchment paper and set aside.
- Step 2: In a medium bowl, whisk together the flour, cocoa powder, salt, and baking powder. Set aside.
- Step 3: In a large bowl, cream the softened butter, brown sugar, and granulated sugar with an electric mixer for about two minutes until light and fluffy.
- Step 4: Add the egg yolks and vanilla to the butter and sugar mixture. Mix for 1-2 minutes until pale and fluffy.
- Step 5: Gradually add the dry ingredients to the wet mixture. Mix just until combined.
- Step 6: Scoop the dough into 34 portions, about 1 tablespoon each, and roll them into balls.
- Step 7: Place the dough balls on the prepared baking sheets. Using a 1/4 teaspoon, press down on each ball to create an indent.
- Step 8: Chill the indented dough balls for at least one hour. You may chill the dough together on one baking sheet and separate it later for baking.
- Step 9: Preheat the oven to 350°F (175°C).
- Step 10: Arrange the chilled dough balls about 1 1/2 inches apart on the baking sheets.
- Step 11: Bake for 9-11 minutes, aiming for 10 minutes for the best texture.
- Step 12: When out of the oven, gently press the centers again with a 1/4 teaspoon to re-form the indent if needed. Use a circular cookie cutter around each while still warm for perfect shape and size.
- Step 13: Let the cookies cool on the baking sheet for 5 minutes, then transfer to a wire rack to cool completely.
- Step 14: For the ganache, place the chocolate chips in a small bowl. Heat the heavy cream until just boiling, then pour it over the chocolate chips. Let sit for 1 minute, then stir until smooth.
- Step 15: Spoon about 1 teaspoon of ganache into each cookie indent. Add more if the well can hold it.
- Step 16: Sprinkle nonpareils over the ganache if desired.
- Step 17: Chill the cookies in the fridge for 10-15 minutes to allow the ganache to set.
Tips & Variations
- For a nuttier touch, add 1/2 cup of finely chopped toasted nuts to the dough.
- Use flavored extracts like almond or peppermint instead of vanilla for a different twist.
- Replace semi-sweet chocolate chips with dark chocolate for a richer ganache.
- Chill the dough overnight to deepen the cookie flavor and make shaping easier.
Storage
Store leftover cookies in an airtight container in the refrigerator for up to three days. Let them come to room temperature before serving for the best texture. Ganache-topped cookies can be gently warmed for a few seconds if desired, but avoid overheating to prevent melting.
How to Serve

Serve this delicious recipe with your favorite sides.
FAQs
Can I freeze these cookies?
Yes, the cookie dough balls can be frozen before baking. Place them on a tray to freeze individually, then store in a freezer-safe bag for up to 3 months. Thaw in the fridge before baking. Finished cookies can also be frozen in an airtight container.
Why did my indentations disappear during baking?
This can happen if the dough is too warm or the indent is not deep enough. Chilling the dough thoroughly before baking helps retain the shape. Also, re-pressing the indent right after baking recovers the shape nicely.
PrintChocolate Thumbprint Cookies with Rich Chocolate Ganache Recipe
These Chocolate Thumbprint Cookies are rich, fudgy, and perfectly chocolatey, featuring a tender cocoa cookie base with a luscious homemade chocolate ganache filling. Topped optionally with colorful nonpareils, these cookies are a delightful treat that’s both visually appealing and decadently delicious, perfect for any chocolate lover.
- Prep Time: 20 minutes
- Cook Time: 10 minutes
- Total Time: 1 hour 30 minutes
- Yield: 34 cookies 1x
- Category: Dessert
- Method: Baking
- Cuisine: American
- Diet: Vegetarian
Ingredients
Dry Ingredients
- 1 1/2 cups (188 g) all-purpose flour, spooned and leveled
- 1/2 cup (40 g) cocoa powder (Dutch process)
- 1/2 tsp salt
- 1/2 tsp baking powder
Cookie Dough
- 3/4 cup (168 g) unsalted butter, softened
- 3/4 cup (165 g) light brown sugar, packed
- 1/4 cup (50 g) granulated white sugar
- 2 egg yolks, at room temperature
- 1 1/2 tsp vanilla bean paste or extract
Chocolate Ganache
- 1 cup (200 g) semi-sweet chocolate chips
- 1/2 cup (120 ml) heavy whipping cream
Optional Topping
- Nonpareils for sprinkling on top
Instructions
- Prepare Dry Ingredients: In a medium-sized bowl, whisk together the all-purpose flour, Dutch-processed cocoa powder, salt, and baking powder until well combined, then set aside.
- Cream Butter and Sugars: In a large bowl, use an electric mixer to cream the softened unsalted butter, light brown sugar, and granulated white sugar together for two minutes until light and fluffy.
- Add Egg Yolks and Vanilla: Mix in the two egg yolks and vanilla bean paste or extract to the butter-sugar mixture. Beat for 1-2 minutes until the mixture turns pale and fluffy.
- Combine Dry and Wet Ingredients: Gradually add the dry ingredient mixture to the wet ingredients and mix until just combined, careful not to overmix.
- Shape the Dough: Scoop the dough into 34 portions, roughly 1 tablespoon each, and roll each into balls. Place them onto prepared baking sheets lined with parchment paper.
- Create Indents: Using a 1/4 teaspoon, gently press down on each dough ball to form an indent for the filling. Chill the shaped dough balls in the refrigerator for at least one hour to firm up.
- Preheat Oven and Bake: Preheat your oven to 350°F (175°C). Arrange the chilled dough balls about 1 1/2 inches apart on baking sheets. Bake the cookies for 9-11 minutes, aiming for 10 minutes for perfect texture.
- Reset Indents After Baking: Immediately after baking, press down again on the cookie centers with a 1/4 teaspoon as they may have puffed up. Optionally, use a circular cookie cutter to perfect the shape while still warm. Let cookies cool on the baking sheet for 5 minutes before transferring to a rack to cool completely.
- Make the Ganache: Place the semi-sweet chocolate chips in a small bowl. Heat the heavy cream until just about boiling, then pour over the chocolate chips. Let sit for 1 minute, then stir until smooth and glossy.
- Assemble and Chill: Spoon about 1 teaspoon of ganache into each cookie indent, adding more if space allows. Sprinkle nonpareils on top if desired. Refrigerate the cookies for 10-15 minutes to allow the ganache to set firmly.
- Storage: Store any leftover cookies in an airtight container in the refrigerator for up to three days to maintain freshness and ganache texture.
Notes
- Spooning and leveling flour ensures accurate measurement and a better cookie texture.
- Chilling the dough is crucial for maintaining cookie shape and creating the perfect indent for filling.
- Using Dutch-process cocoa gives a rich, less acidic chocolate flavor.
- Pressing the indents post-baking helps maintain the cookie’s signature shape.
- If you don’t have vanilla bean paste, vanilla extract can be used as a substitute.
- Ganache can be made ahead and gently rewarmed if necessary before filling the cookies.
- Nonpareils add a colorful decorative touch but can be omitted for a simpler presentation.
Keywords: chocolate thumbprint cookies, chocolate ganache cookies, cocoa cookies, holiday cookies, thumbprint cookies recipe, chocolate cookies, easy chocolate desserts

